PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000468391
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 348aa    MW: 38707.1 Da    PI: 6.3146
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000468391genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.41.6e-29136197159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                    ldDg++WrKYGqK++ g+++pr+YYrCt++   +C ++k+v+rs+edp+++eitY+g+H+++
  MDP0000468391 136 LDDGFSWRKYGQKDILGAKYPRGYYRCTHRnvqSCXATKQVQRSDEDPTIFEITYRGKHTCT 197
                    59***************************98989**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.343131194IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.4E-29132198IPR003657WRKY domain
SuperFamilySSF1182909.68E-26135198IPR003657WRKY domain
SMARTSM007741.0E-40136198IPR003657WRKY domain
PfamPF031066.3E-27137196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MENCNIHWEQ KSLVNELAQG RDLARQLQIH LNVPSSSYGT RELLVQKIIL SYEKALSMLN  60
SSSSASGGEQ QQPTGHVAIR MVESPPHSLN ESPRSEDSDR EFKDHDNKDS SRKRKNLPRW  120
TXQIRVTSGM GLEGPLDDGF SWRKYGQKDI LGAKYPRGYY RCTHRNVQSC XATKQVQRSD  180
EDPTIFEITY RGKHTCTQAS TGTSTPPSPS PLQPERTERQ NNLVDPQQNQ QQSQQHTLLN  240
LPEGLRVITE GLDTREELFP SFNSPSPLNN SYVGSFSSPF AGPTTSGTNY FSMSQRDFGV  300
DQNFQSGEII SAPTSATNSP SVGLDIPFGQ ADQLFPNFSF DGPGFFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lex_A3e-121361941772Probable WRKY transcription factor 4
1wj2_A3e-121361941772Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008354252.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLM5X0I41e-154M5X0I4_PRUPE; Uncharacterized protein
STRINGPOPTR_0012s01380.11e-123(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.17e-55WRKY family protein